Haploview

Software for haplotype analysis and visualization

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Added 9 Jul 2026

Edited 22 Jul 2026 by Admin · history

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Haploview is a software tool designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. It supports functionalities including LD & haplotype block analysis, haplotype population frequency estimation, single SNP and haplotype association tests, permutation testing for association significance, and visualization of PLINK whole genome association results. Haploview is fully compatible with data dumps from the HapMap project and can analyze thousands of SNPs in thousands of individuals.

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Haploview

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